SNP Profiles of C SUL 7 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CT	AC	AG	AA	TT	CT	CT	CT	GG	CT	CT	CT	AA
1._GC-08-261-8-29	AA	CT	AC	AG	AA	TT	CT	CT	CT	GG	CT	CT	CT	AA
2._GC-08-261-8-29	AA	CT	AC	AG	AA	TT	CT	CT	CT	GG	CT	CT	CT	AA
3._GC-08-261-8-29	AA	CT	AC	AG	AA	TT	CT	CT	CT	GG	CT	CT	CT	AA
4._GC-08-261-8-29	AA	CT	AC	AG	AA	TT	CT	CT	CT	GG	CT	CT	CT	AA
5._C_SUL_7	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CT	_	_
6._C_SUL_7	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CT	_	_
7._C_SUL_7	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CT	_	_
8._C_SUL_7	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CT	_	_
9._C_SUL_7	AA	CT	AC	_	_	_	_	CT	CT	GG	_	CT	_	_
10._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
11._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
12._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
13._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
14._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
15._C_SUL_7	AA	CC	CC	_	_	_	_	CC	CT	GG	_	TT	_	_
16._C_SUL_7	AT	CT	CC	_	_	_	_	CC	CT	GG	_	CT	_	_
17._NA	AA	CC	CC	AG	AA	CT	TT	CC	CT	GG	TT	TT	TT	AT
18._NA	AA	CC	CC	AG	AA	CT	TT	CC	CT	GG	TT	TT	TT	AT
19._NA	AA	CC	CC	AG	AA	CT	TT	CC	CT	GG	TT	TT	TT	AT
20._NA	AA	CC	CC	AG	AA	CT	TT	CC	CT	GG	TT	TT	TT	AT
21._NA	AA	CC	CC	AG	AA	CT	TT	CC	CT	GG	TT	TT	TT	AT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	AA	AG	CG	CG	CG	CC	AG	CT	AG	AT	AA	CG	CG
1._GC-08-261-8-29	AC	AA	AG	CG	CG	CG	CC	AG	CT	AG	AT	AA	CG	CG
2._GC-08-261-8-29	AC	AA	AG	CG	CG	CG	CC	AG	CT	AG	AT	AA	CG	CG
3._GC-08-261-8-29	AC	AA	AG	CG	CG	CG	CC	AG	CT	AG	AT	AA	CG	CG
4._GC-08-261-8-29	AC	AA	AG	CG	CG	CG	CC	AG	CT	AG	AT	AA	CG	CG
5._C_SUL_7	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	CG
6._C_SUL_7	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	CG
7._C_SUL_7	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	CG
8._C_SUL_7	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	CG
9._C_SUL_7	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	CG
10._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
11._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
12._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
13._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
14._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
15._C_SUL_7	_	_	GG	_	_	GG	_	_	_	_	AA	AA	_	CG
16._C_SUL_7	_	_	AG	_	_	GG	_	_	_	_	AT	AT	_	GG
17._NA	AA	AA	GG	GG	CG	GG	CC	AA	TT	GG	AA	AA	GG	CG
18._NA	AA	AA	GG	GG	CG	GG	CC	AA	TT	GG	AA	AA	GG	CG
19._NA	AA	AA	GG	GG	CG	GG	CC	AA	TT	GG	AA	AA	GG	CG
20._NA	AA	AA	GG	GG	CG	GG	CC	AA	TT	GG	AA	AA	GG	CG
21._NA	AA	AA	GG	GG	CG	GG	CC	AA	TT	GG	AA	AA	GG	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	TT	GT	GG	CC	CC	AA	GG	GT	TT	GG	AG	CG	GT
1._GC-08-261-8-29	AT	TT	GT	GG	CC	CC	AA	GG	GT	TT	GG	AG	CG	GT
2._GC-08-261-8-29	AT	TT	GT	GG	CC	CC	AA	GG	GT	TT	GG	AG	CG	GT
3._GC-08-261-8-29	AT	TT	GT	GG	CC	CC	AA	GG	GT	TT	GG	AG	CG	GT
4._GC-08-261-8-29	AT	TT	GT	GG	CC	CC	AA	GG	GT	TT	GG	AG	CG	GT
5._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	GG	_	_	_
6._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	GG	_	_	_
7._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	GG	_	_	_
8._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	GG	_	_	_
9._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	GG	_	_	_
10._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
11._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
12._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
13._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
14._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
15._C_SUL_7	AT	_	_	_	CC	_	AA	GG	_	_	AA	_	_	_
16._C_SUL_7	AT	_	_	_	CG	_	AG	GT	_	_	AG	_	_	_
17._NA	AT	TT	TT	AG	CC	CC	AA	GG	GG	TT	AA	GG	CC	GG
18._NA	AT	TT	TT	AG	CC	CC	AA	GG	GG	TT	AA	GG	CC	GG
19._NA	AT	TT	TT	AG	CC	CC	AA	GG	GG	TT	AA	GG	CC	GG
20._NA	AT	TT	TT	AG	CC	CC	AA	GG	GG	TT	AA	GG	CC	GG
21._NA	AT	TT	TT	AG	CC	CC	AA	GG	GG	TT	AA	GG	CC	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AT	CC	AG	AA	AG	CT	AC	AG	AG	GG	TT	CC	GT	AG
1._GC-08-261-8-29	AT	CC	AG	AA	AG	CT	AC	AG	AG	GG	TT	CC	GT	AG
2._GC-08-261-8-29	AT	CC	AG	AA	AG	CT	AC	AG	AG	GG	TT	CC	GT	AG
3._GC-08-261-8-29	AT	CC	AG	AA	AG	CT	AC	AG	AG	GG	TT	CC	GT	AG
4._GC-08-261-8-29	AT	CC	AG	AA	AG	CT	AC	AG	AG	GG	TT	CC	GT	AG
5._C_SUL_7	_	CC	_	_	_	_	_	_	_	_	TT	CC	_	_
6._C_SUL_7	_	CC	_	_	_	_	_	_	_	_	TT	CC	_	_
7._C_SUL_7	_	CC	_	_	_	_	_	_	_	_	TT	CC	_	_
8._C_SUL_7	_	CC	_	_	_	_	_	_	_	_	TT	CC	_	_
9._C_SUL_7	_	CC	_	_	_	_	_	_	_	_	TT	CC	_	_
10._C_SUL_7	_	TT	_	_	_	_	_	_	_	_	TT	CC	_	_
11._C_SUL_7	_	TT	_	_	_	_	_	_	_	_	TT	CC	_	_
12._C_SUL_7	_	TT	_	_	_	_	_	_	_	_	TT	CC	_	_
13._C_SUL_7	_	TT	_	_	_	_	_	_	_	_	TT	CC	_	_
14._C_SUL_7	_	TT	_	_	_	_	_	_	_	_	TT	CC	_	_
15._C_SUL_7	_	TT	_	_	_	_	_	_	_	_	TT	CC	_	_
16._C_SUL_7	_	CT	_	_	_	_	_	_	_	_	CT	CT	_	_
17._NA	TT	TT	AA	GG	AA	CC	AC	GG	AA	GG	TT	CC	TT	GG
18._NA	TT	TT	AA	GG	AA	CC	AC	GG	AA	GG	TT	CC	TT	GG
19._NA	TT	TT	AA	GG	AA	CC	AC	GG	AA	GG	TT	CC	TT	GG
20._NA	TT	TT	AA	GG	AA	CC	AC	GG	AA	GG	TT	CC	TT	GG
21._NA	TT	TT	AA	GG	AA	CC	AC	GG	AA	GG	TT	CC	TT	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CG	CT	TT	CG	AG	AC	AA	GG	GG	AA	CT	CG	AG	CT
1._GC-08-261-8-29	CG	CT	TT	CG	AG	AC	AA	GG	GG	AA	CT	CG	AG	CT
2._GC-08-261-8-29	CG	CT	TT	CG	AG	AC	AA	GG	GG	AA	CT	CG	AG	CT
3._GC-08-261-8-29	CG	CT	TT	CG	AG	AC	AA	GG	GG	AA	CT	CG	AG	CT
4._GC-08-261-8-29	CG	CT	TT	CG	AG	AC	AA	GG	GG	AA	CT	CG	AG	CT
5._C_SUL_7	CG	_	TT	CG	_	AC	AA	GG	GG	_	_	_	AG	CT
6._C_SUL_7	CG	_	TT	CG	_	AC	AA	GG	GG	_	_	_	AG	CT
7._C_SUL_7	CG	_	TT	CG	_	AC	AA	GG	GG	_	_	_	AG	CT
8._C_SUL_7	CG	_	TT	CG	_	AC	AA	GG	GG	_	_	_	AG	CT
9._C_SUL_7	CG	_	TT	CG	_	AC	AA	GG	GG	_	_	_	AG	CT
10._C_SUL_7	CG	_	CT	GG	_	AC	AA	GG	GT	_	_	_	AG	CT
11._C_SUL_7	CG	_	CT	GG	_	AC	AA	GG	GT	_	_	_	AA	CT
12._C_SUL_7	CG	_	CT	GG	_	AC	AA	GG	GT	_	_	_	AA	CT
13._C_SUL_7	CG	_	CT	GG	_	AC	AA	GG	GT	_	_	_	AA	CT
14._C_SUL_7	CG	_	CT	GG	_	AC	AA	GG	GT	_	_	_	AA	CT
15._C_SUL_7	CG	_	CT	GG	_	AC	AA	GG	GT	_	_	_	AA	_
16._C_SUL_7	CG	_	CT	CG	_	CC	AA	GT	GG	_	_	_	AG	CT
17._NA	CG	CC	CT	GG	GG	AC	AA	GG	GT	AA	CC	CC	AA	CT
18._NA	CG	CC	CT	GG	GG	AC	AA	GG	GT	AA	CC	CC	AA	CT
19._NA	CG	CC	CT	GG	GG	AC	AA	GG	GT	AA	CC	CC	AA	CT
20._NA	CG	CC	CT	GG	GG	AC	AA	GG	GT	AA	CC	CC	AA	CT
21._NA	CG	CC	CT	GG	GG	AC	AA	GG	GT	AA	CC	CC	AA	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AC	GG	CC	AC	AG	AC	CG	CC	AT	CC	CT	CC	CC	CT
1._GC-08-261-8-29	AC	GG	CC	AC	AG	AC	CG	CC	AT	CC	CT	CC	CC	CT
2._GC-08-261-8-29	AC	GG	CC	AC	AG	AC	CG	CC	AT	CC	CT	CC	CC	CT
3._GC-08-261-8-29	AC	GG	CC	AC	AG	AC	CG	CC	AT	CC	CT	CC	CC	CT
4._GC-08-261-8-29	AC	GG	CC	AC	AG	AC	CG	CC	AT	CC	CT	CC	CC	CT
5._C_SUL_7	_	_	_	_	_	AC	CG	_	_	_	CT	CC	CC	_
6._C_SUL_7	_	_	_	_	_	AC	CG	_	_	_	CT	CC	CC	_
7._C_SUL_7	_	_	_	_	_	AC	CG	_	_	_	CT	CC	CC	_
8._C_SUL_7	_	_	_	_	_	AC	CG	_	_	_	CT	CC	CC	_
9._C_SUL_7	_	_	_	_	_	AC	CG	_	_	_	CT	CC	CC	_
10._C_SUL_7	_	_	_	_	_	AC	CC	_	_	_	CC	CC	CC	_
11._C_SUL_7	_	_	_	_	_	AC	CC	_	_	_	CC	CC	CC	_
12._C_SUL_7	_	_	_	_	_	AC	CC	_	_	_	CC	CC	CC	_
13._C_SUL_7	_	_	_	_	_	AC	CC	_	_	_	CC	CC	CC	_
14._C_SUL_7	_	_	_	_	_	AC	CC	_	_	_	CC	CC	CC	_
15._C_SUL_7	_	_	_	_	_	AC	CC	_	_	_	CC	_	CC	_
16._C_SUL_7	_	_	_	_	_	AC	CG	_	_	_	TT	TT	CT	_
17._NA	CC	GG	CC	CC	GG	AC	CC	CC	AA	AA	CC	CC	CC	CC
18._NA	CC	GG	CC	CC	GG	AC	CC	CC	AA	AA	CC	CC	CC	CC
19._NA	CC	GG	CC	CC	GG	AC	CC	CC	AA	AA	CC	CC	CC	CC
20._NA	CC	GG	CC	CC	GG	AC	CC	CC	AA	AA	CC	CC	CC	CC
21._NA	CC	GG	CC	CC	GG	AC	CC	CC	AA	AA	CC	_	CC	CC

	85	86	87	88	89	90	91
_Input profile	GG	CC	CT	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-08-261-8-29	GG	CC	CT	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-08-261-8-29	GG	CC	CT	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-08-261-8-29	GG	CC	CT	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-08-261-8-29	GG	CC	CT	GG	CT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._C_SUL_7	GG	_	CT	GG	CT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._C_SUL_7	GG	_	CT	GG	CT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._C_SUL_7	GG	_	CT	GG	CT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._C_SUL_7	GG	_	CT	GG	CT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._C_SUL_7	GG	_	CT	GG	CT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._C_SUL_7	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._C_SUL_7	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._C_SUL_7	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._C_SUL_7	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._C_SUL_7	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._C_SUL_7	GG	_	CT	GG	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._C_SUL_7	AG	_	CC	GT	CT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._NA	GG	CC	CT	GG	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._NA	GG	CC	CT	GG	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._NA	GG	CC	CT	GG	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._NA	GG	CC	CT	GG	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._NA	GG	CC	CT	GG	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: C_SUL_7 GC-08-261-8-29

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

1._C_SUL_7 GC-08-261-8-29

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

2._C_SUL_7 GC-08-261-8-29

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

3._C_SUL_7 GC-08-261-8-29

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

4._C_SUL_7 GC-08-261-8-29

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

5._C_SUL_7

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 5

Dapeng Zhang, 2016

6._C_SUL_7

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._C_SUL_7

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 3

Dapeng Zhang, 2016

8._C_SUL_7

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 4

Dapeng Zhang, 2016

9._C_SUL_7

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8829 7

Dapeng Zhang, 2016

10._C_SUL_7

77.6 %
38 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P95 583

Dapeng Zhang, 2016

11._C_SUL_7

76.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._C_SUL_7

76.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 5

Dapeng Zhang, 2016

13._C_SUL_7

76.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 6

Dapeng Zhang, 2016

14._C_SUL_7

76.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 7

Dapeng Zhang, 2016

15._C_SUL_7

75 %
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8129 3

Dapeng Zhang, 2016

16._C_SUL_7

69.7 %
38 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

17._C_SUL_7 NA

68.7 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

18._C_SUL_7 NA

68.7 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

19._C_SUL_7 NA

68.7 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

20._C_SUL_7 NA

68.7 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

21._C_SUL_7 NA

68 %
89 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP689	48	TcSNP944	49	TcSNP1242	50	TcSNP1383
51	TcSNP547	52	TcSNP776	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP25
61	TcSNP364	62	TcSNP144	63	TcSNP230	64	TcSNP560	65	TcSNP723
66	TcSNP731	67	TcSNP701	68	TcSNP1041	69	TcSNP645	70	TcSNP917
71	Tcm003s01336581	72	Tcm003s07402719	73	Tcm001s00947643	74	Tcm006s26664133	75	Tcm002s20575712
76	TcSNP529	77	TcSNP1458	78	TcSNP60	79	TcSNP430	80	TcSNP823
81	TcSNP619	82	TcSNP994	83	TcSNP1144	84	TcSNP1156	85	TcSNP469
86	TcSNP999	87	TcSNP242	88	TcSNP1253	89	TcSNP1414	90	TcSNP154
91	TcSNP240